PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21467_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 413aa    MW: 45684.7 Da    PI: 8.5072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21467_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  RrC21467_p1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-6528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.3E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552404878IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.82E-678103No hitNo description
SMARTSM0035518083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PEESCVHHDP  60
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR  120
RDSFITHRAF CEALAEETAR EVVIPQNQNH QPNPLMIQQS SSSSPHHHQA QPTVNISSSS  180
SSSHNIINSL HFETNHNGTN NSNTNSNHLH TFPMKIEQQQ SNDHIINYHQ HIIPPWLTSP  240
NPNPSNGGGG LFSLAPSPAM SATALLQKAA QMGSTKSPPL PPNTDSERPA HHNNNLTTKM  300
ASMMTSPSGF ISSNNSNNQV LFQDYNASEF DHHGGEEAFD DTFGGFLRTN VDTTTTSGSD  360
KNKSGGGGGE GLTRDFLGLR PLMSHNEILS FAGLGNCING SASDQLHPKP WQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13245KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610759.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
RefseqXP_013610764.10.0PREDICTED: protein indeterminate-domain 11-like isoform X2
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3ADV30.0A0A0D3ADV3_BRAOL; Uncharacterized protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.31e-178indeterminate(ID)-domain 11